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Nocardioides nanhaiensis sp nov., an actinobacterium isolated from a marine sediment sample
Zhang, DF; Zhong, JM; Zhang, XM; Jiang, Z; Zhou, EM; Tian, XP; Zhang, S; Li, WJ; wjli@ynu.edu.cn
2014
Source PublicationINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
ISSN1466-5026
Volume64Pages:2718-2722
AbstractA rod- to coccus-shaped, non-spore-forming actinobacterium, strain YIM M13091(T), was isolated from a marine sediment sample collected from the South China Sea and examined by a polyphasic approach to clarify its taxonomic position. This Gram-staining-positive, aerobic actinobacterium did not produce substrate mycelium and aerial hyphae, and no diffusible pigments were produced on the media tested. The optimum growth occurred at 30 degrees C, 1 % (w/v) NaCl and pH 8.0. Phylogenetic analysis based on 16S rRNA gene sequences showed that the isolate belongs to the genus Nocardioides, with low levels (<= 96.2%) of sequence similarity with respect to Nocardioides kribbensis KSL-2(T) and other members of the genus Nocardioides. Whole-organism hydrolysates of the strain contained LL-2,6-diaminopimelic acid as the diagnostic diamino acid. The predominant menaquinone was MK-8(H-4), with MK-8 in a minor amount. Diphosphatidylglycerol, phosphatidylglycerol, phosphatidylinositol, hydroxphosphatidylinositol and phosphatidylcholine, were the main polar lipids detected, while iso-C-16:0 and C-18:1 omega 9c were the major fatty acids. The G+C content of the genomic DNA was 68.5 mol%. Based on phylogenetic analysis, phenotypic and genotypic data, it is concluded that the isolate represents a member of the genus Nocardioides, and the name Nocardioides nanhaiensis sp. nov. (Type strain YIM M13091(T)=JCM 18127(T)=CCTCC AA 2011020(T)) is proposed for the novel species.
Department[Zhang, Dao-Feng ; Zhong, Jing-Mei] Kunming Univ Sci & Technol, Fac Environm Sci & Engn, Kunming 650500, Peoples R China ; [Zhang, Dao-Feng ; Zhong, Jing-Mei ; Zhang, Xiao-Mei ; Jiang, Zhao ; Zhou, En-Min ; Li, Wen-Jun] Yunnan Univ, Minist Educ, Key Lab Microbial Divers Southwest China, Kunming 650091, Peoples R China ; [Zhang, Dao-Feng ; Zhong, Jing-Mei ; Zhang, Xiao-Mei ; Jiang, Zhao ; Zhou, En-Min ; Li, Wen-Jun] Yunnan Univ, Lab Conservat & Utilizat Bioresources, Yunnan Inst Microbiol, Kunming 650091, Peoples R China ; [Tian, Xin-Peng] Chinese Acad Sci, Key Lab Trop Marine Bioresources & Ecol, Guangzhou 510301, Guangdong, Peoples R China ; [Tian, Xin-Peng] Chinese Acad Sci, RNAM Ctr Marine Microbiol, Guangzhou 510301, Guangdong, Peoples R China ; [Tian, Xin-Peng] Guangdong Key Lab Marine Mat Medica, Guangzhou 510301, Guangdong, Peoples R China ; [Tian, Xin-Peng] Chinese Acad Sci, Souht China Sea Inst Oceanol, Guangzhou 510301, Guangdong, Peoples R China ; [Zhang, Dao-Feng] Shanghai Jiao Tong Univ, Sch Agr & Biol, MOST USDA Joint Res Ctr Food Safety, Shanghai 200240, Peoples R China ; [Zhang, Dao-Feng] Shanghai Jiao Tong Univ, Sch Agr & Biol, Bor Luh Food Safety Ctr, Shanghai 200240, Peoples R China ; [Zhang, Dao-Feng] Shanghai Jiao Tong Univ, State Key Lab Microbial Metab, Shanghai 200240, Peoples R China
Subject AreaMicrobiology
Funding OrganizationNational Basic Research Program of China [2010CB833801] ; National Basic Research Program of China [2010CB833801] ; National Basic Research Program of China [2010CB833801] ; National Basic Research Program of China [2010CB833801]
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Indexed Bysci
Funding ProjectLMB
Funding OrganizationNational Basic Research Program of China [2010CB833801] ; National Basic Research Program of China [2010CB833801] ; National Basic Research Program of China [2010CB833801] ; National Basic Research Program of China [2010CB833801]
WOS IDWOS:000342883100033
Citation statistics
Cited Times:10[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.scsio.ac.cn/handle/344004/10406
Collection中科院海洋生物资源可持续利用重点实验室
Corresponding Authorwjli@ynu.edu.cn
Recommended Citation
GB/T 7714
Zhang, DF,Zhong, JM,Zhang, XM,et al. Nocardioides nanhaiensis sp nov., an actinobacterium isolated from a marine sediment sample[J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,2014,64:2718-2722.
APA Zhang, DF.,Zhong, JM.,Zhang, XM.,Jiang, Z.,Zhou, EM.,...&wjli@ynu.edu.cn.(2014).Nocardioides nanhaiensis sp nov., an actinobacterium isolated from a marine sediment sample.INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,64,2718-2722.
MLA Zhang, DF,et al."Nocardioides nanhaiensis sp nov., an actinobacterium isolated from a marine sediment sample".INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 64(2014):2718-2722.
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