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Differential gene expression identified by RNA-Seq and qPCR in two sizes of pearl oyster (Pinctada fucata)
Shi, Y; He, MX; hmx@scsio.ac.cn
2014
Source PublicationGENE
ISSN0378-1119
Volume538Issue:2Pages:313-322
AbstractDifferential growth of the pearl oyster Pinctada fucata still exists in the aquaculture production. There is no systematic study of the entire transcriptome of differential gene expression in P. fucata in the literature. In this study, high-throughput Illumina/HiSeq (TM) 2000 RNA-Seq was used to examine the differences of gene expression in large (L) and small oysters (S). In total, 74,293 and 76,635 unigenes were generated from Land S oysters, respectively. RT quantitative PCR (qPCR) analysis showed that the differential expression pattern of 19 out of 34 selected genes was consistent with the results of RNA-Seq analysis: 14 genes (11 for growth, 1 for reproduction and 2 for shell formation) were expressed more highly in S,5 genes (1 for growth, 1 for reproduction and 3 for the immune system) were expressed more highly in L; 3 genes associated with the immune system were opposite to it; and no difference was found for the remaining 12 genes. Another 9 shell formation-related genes in L and S were examined by qPCR: 1 gene was expressed more highly in L, 5 genes were expressed more highly in S and no difference was found for the remaining 3 genes. Some genes related to growth and development, shell formation and reproduction were expressed more highly in S compared to L This phenomenon could be explained by "catch-up growth". The results of this study will help toward a comprehensive understanding of the complexity of differential growth between P. fucata individuals and provide valuable information for future research. (C) 2014 Elsevier B.V. All rights reserved.
Department[Shi, Yu ; He, Maoxian] Chinese Acad Sci, CAS Key Lab Trop Marine Bioresources & Ecol, South China Sea Inst Oceanol, Guangzhou 510301, Guangdong, Peoples R China
KeywordPinctada Fucata Rna-seq Differential Gene Expression Growth Reproduction Immune System
Subject AreaGenetics & Heredity
Funding OrganizationNational Science and Technology Program of China [2012AA10A410]; Funds of Knowledge Innovation Program of the Chinese Academy of Sciences [ZCX2-EW-Q21]; Joint Program of NSFC-Guangdong [U0831001]; Marine Fishery Science and Technology Promotion Program of Guangdong Province, China [A201201A05] ; National Science and Technology Program of China [2012AA10A410]; Funds of Knowledge Innovation Program of the Chinese Academy of Sciences [ZCX2-EW-Q21]; Joint Program of NSFC-Guangdong [U0831001]; Marine Fishery Science and Technology Promotion Program of Guangdong Province, China [A201201A05] ; National Science and Technology Program of China [2012AA10A410]; Funds of Knowledge Innovation Program of the Chinese Academy of Sciences [ZCX2-EW-Q21]; Joint Program of NSFC-Guangdong [U0831001]; Marine Fishery Science and Technology Promotion Program of Guangdong Province, China [A201201A05] ; National Science and Technology Program of China [2012AA10A410]; Funds of Knowledge Innovation Program of the Chinese Academy of Sciences [ZCX2-EW-Q21]; Joint Program of NSFC-Guangdong [U0831001]; Marine Fishery Science and Technology Promotion Program of Guangdong Province, China [A201201A05]
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Indexed Bysci
Funding ProjectLMB
Funding OrganizationNational Science and Technology Program of China [2012AA10A410]; Funds of Knowledge Innovation Program of the Chinese Academy of Sciences [ZCX2-EW-Q21]; Joint Program of NSFC-Guangdong [U0831001]; Marine Fishery Science and Technology Promotion Program of Guangdong Province, China [A201201A05] ; National Science and Technology Program of China [2012AA10A410]; Funds of Knowledge Innovation Program of the Chinese Academy of Sciences [ZCX2-EW-Q21]; Joint Program of NSFC-Guangdong [U0831001]; Marine Fishery Science and Technology Promotion Program of Guangdong Province, China [A201201A05] ; National Science and Technology Program of China [2012AA10A410]; Funds of Knowledge Innovation Program of the Chinese Academy of Sciences [ZCX2-EW-Q21]; Joint Program of NSFC-Guangdong [U0831001]; Marine Fishery Science and Technology Promotion Program of Guangdong Province, China [A201201A05] ; National Science and Technology Program of China [2012AA10A410]; Funds of Knowledge Innovation Program of the Chinese Academy of Sciences [ZCX2-EW-Q21]; Joint Program of NSFC-Guangdong [U0831001]; Marine Fishery Science and Technology Promotion Program of Guangdong Province, China [A201201A05]
WOS IDWOS:000333789000014
Citation statistics
Document Type期刊论文
Identifierhttp://ir.scsio.ac.cn/handle/344004/10455
Collection中科院海洋生物资源可持续利用重点实验室
Corresponding Authorhmx@scsio.ac.cn
Recommended Citation
GB/T 7714
Shi, Y,He, MX,hmx@scsio.ac.cn. Differential gene expression identified by RNA-Seq and qPCR in two sizes of pearl oyster (Pinctada fucata)[J]. GENE,2014,538(2):313-322.
APA Shi, Y,He, MX,&hmx@scsio.ac.cn.(2014).Differential gene expression identified by RNA-Seq and qPCR in two sizes of pearl oyster (Pinctada fucata).GENE,538(2),313-322.
MLA Shi, Y,et al."Differential gene expression identified by RNA-Seq and qPCR in two sizes of pearl oyster (Pinctada fucata)".GENE 538.2(2014):313-322.
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