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Pseudonocardia sediminis sp nov., isolated from marine sediment
Zhang, DF; Jiang, Z; Li, L; Liu, BB; Zhang, XM; Tian, XP; Zhang, S; Li, WJ; zhsimd@scsio.ac.cn; wjli@ynu.edu.cn
2014
Source PublicationINTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
ISSN1466-5026
Volume64Pages:745-750
AbstractA Gram-stain-positive, aerobic actinomycete, designated strain YIM M13141(T), was isolated from a marine sediment sample from the South China Sea, and its taxonomic position was determined using a polyphasic approach. The strain produced branched substrate mycelium and aerial hyphae, but no diffusible pigments were produced on the media tested. At maturity, substrate mycelium was fragmented and spore chains were formed on aerial hyphae and substrate mycelium. Optimum growth occurred at 28 degrees C, 1-3% (w/v) NaCl and pH 7.0. Comparative analysis of the 16S rRNA gene sequence showed that the isolate belongs to the genus Pseudonocardia, showing highest levels of similarity with respect to Pseudonocardia sichuanensis KLBMP 1115(T) (97.1%), Pseudonocardia tetrahydrofuranoxydans K1(T) (97.1 %) and Pseudonocardia kunmingensis YIM 63158(T) (97.0%). Whole-organism hydrolysates of the strain contained meso-diaminopimelic acid and the sugars galactose, glucose, mannose and arabinose. The predominant menaquinone was MK-8(H-4). The polar lipids detected were diphosphatidylglycerol, phosphatidylcholine, phosphatidylinositol, phosphatidylmethylethanolamine, phosphatidylethanolamine, two unknown phosphoglycolipids and two glycolipids. The major fatty acid was iso-C-16:0. The G+C content of the genomic DNA was 73.1 molok. DNA DNA relatedness with P. tetrahydrofuranoxydans DSM 44239(T) was 42.8 +/- 3.5 % (mean +/- SD). Based on phylogenetic analysis, phenotypic and genotypic data, it is concluded that the isolate represents a novel species of the genus Pseudonocardia, for which the name Pseudonocardia sediminis sp. nov. is proposed. The type strain is YIM M13141(T) (=DSM 45779(T)=JCM 18540(T)).
Department[Zhang, Dao-Feng ; Li, Li ; Li, Wen-Jun] Chinese Acad Sci, Xinjiang Inst Ecol & Geog, Key Lab Biogeog & Bioresource Arid Land, Urumqi 830011, Peoples R China ; [Zhang, Dao-Feng ; Jiang, Zhao ; Liu, Bing-Bing ; Zhang, Xiao-Mei ; Li, Wen-Jun] Yunnan Univ, Minist Educ, Key Lab Microbial Divers Southwest China, Kunming 650091, Peoples R China ; [Zhang, Dao-Feng ; Jiang, Zhao ; Liu, Bing-Bing ; Zhang, Xiao-Mei ; Li, Wen-Jun] Yunnan Univ, Lab Conservat & Utilizat Bioresources, Yunnan Inst Microbiol, Kunming 650091, Peoples R China ; [Tian, Xin-Peng ; Zhang, Si] Chinese Acad Sci, Key Lab Trop Marine Bioresources & Ecol, Guangzhou 510301, Guangdong, Peoples R China ; [Tian, Xin-Peng ; Zhang, Si] Chinese Acad Sci, RNAM Ctr Marine Microbiol, Guangzhou 510301, Guangdong, Peoples R China ; [Tian, Xin-Peng ; Zhang, Si] Guangdong Key Lab Marine Mat Med, Guangzhou 510301, Guangdong, Peoples R China ; [Tian, Xin-Peng ; Zhang, Si] Chinese Acad Sci, South China Sea Inst Oceanol, Guangzhou 510301, Guangdong, Peoples R China
Subject AreaMicrobiology
Funding OrganizationNational Basic Research Program of China [2010CB833801]; Chinese Academy of Sciences ; National Basic Research Program of China [2010CB833801]; Chinese Academy of Sciences ; National Basic Research Program of China [2010CB833801]; Chinese Academy of Sciences ; National Basic Research Program of China [2010CB833801]; Chinese Academy of Sciences
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Funding ProjectLMB
Funding OrganizationNational Basic Research Program of China [2010CB833801]; Chinese Academy of Sciences ; National Basic Research Program of China [2010CB833801]; Chinese Academy of Sciences ; National Basic Research Program of China [2010CB833801]; Chinese Academy of Sciences ; National Basic Research Program of China [2010CB833801]; Chinese Academy of Sciences
WOS IDWOS:000337930900008
Citation statistics
Cited Times:5[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.scsio.ac.cn/handle/344004/10458
Collection中科院海洋生物资源可持续利用重点实验室
Corresponding Authorzhsimd@scsio.ac.cn; wjli@ynu.edu.cn
Recommended Citation
GB/T 7714
Zhang, DF,Jiang, Z,Li, L,et al. Pseudonocardia sediminis sp nov., isolated from marine sediment[J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,2014,64:745-750.
APA Zhang, DF.,Jiang, Z.,Li, L.,Liu, BB.,Zhang, XM.,...&wjli@ynu.edu.cn.(2014).Pseudonocardia sediminis sp nov., isolated from marine sediment.INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY,64,745-750.
MLA Zhang, DF,et al."Pseudonocardia sediminis sp nov., isolated from marine sediment".INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 64(2014):745-750.
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