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The complete mitochondrial genome of peacock sole Pardachirus pavoninus (Pleuronectiformes: Soleidae) and comparative analysis of the control region among 13 soles
Gong, L.1; Shi, W.1; Si, L. -Z.1; Wang, Z. -M.1; Kong, X. -Y.1; xykong@scsio.ac.cn
2015
Source PublicationMOLECULAR BIOLOGY
Volume49Issue:3Pages:408-417
AbstractThe complete mitogenome of the peacock sole Pardachirus pavoninus (LacepSde, 1802) was determined. The total length is 16536 bp, containing 13 protein-coding genes, 22 tRNA genes and two rRNA genes, as well as one control region (CR). The L-strand replication origin (O-L), which is typically located in the WANCY cluster, is lost in P. pavoninus. The gene arrangement is identical to that in most teleosts. Comparison of the CR sequences among 13 soles reveals that a 211-bp fragment at the 5'-end of the CR is lost in the P. pavoninus mitogenome, responsible for its short sequence with a length of 872 bp. All typical conservative blocks (TAS, CSB-F, E, D, C, B, A, CSB-1, 2, 3) are identified. Seven out of 13 soles contain tandem repeats in the CR and the possible mechanisms of their formation are discussed. These results may provide the consensus sequences of the conserved units in the sole CR as well as molecular data for phylogenetic studies on Soleidae and Pleuronectiformes.
DepartmentLMB
KeywordFlatfish O-l Heteroplasmy Tandem Repeat Termination Associated Sequence
Subject AreaBiochemistry & Molecular Biology
URL查看原文
Document Type期刊论文
Identifierhttp://ir.scsio.ac.cn/handle/344004/14834
Collection中科院海洋生物资源可持续利用重点实验室
Corresponding Authorxykong@scsio.ac.cn
Affiliation1.[Gong, L.
2.Shi, W.
3.Si, L. -Z.
4.Kong, X. -Y.] Chinese Acad Sci, South China Sea Inst Oceanol, Key Lab Trop Marine Bioresources & Ecol, Guangzhou 510000, Guangdong, Peoples R China
5.[Gong, L.
6.Si, L. -Z.] Univ Chinese Acad Sci, Beijing 100000, Peoples R China
7.[Wang, Z. -M.] Marine Fisheries Res Inst Zhejiang, Zhoushan 316021, Peoples R China
Recommended Citation
GB/T 7714
Gong, L.,Shi, W.,Si, L. -Z.,et al. The complete mitochondrial genome of peacock sole Pardachirus pavoninus (Pleuronectiformes: Soleidae) and comparative analysis of the control region among 13 soles[J]. MOLECULAR BIOLOGY,2015,49(3):408-417.
APA Gong, L.,Shi, W.,Si, L. -Z.,Wang, Z. -M.,Kong, X. -Y.,&xykong@scsio.ac.cn.(2015).The complete mitochondrial genome of peacock sole Pardachirus pavoninus (Pleuronectiformes: Soleidae) and comparative analysis of the control region among 13 soles.MOLECULAR BIOLOGY,49(3),408-417.
MLA Gong, L.,et al."The complete mitochondrial genome of peacock sole Pardachirus pavoninus (Pleuronectiformes: Soleidae) and comparative analysis of the control region among 13 soles".MOLECULAR BIOLOGY 49.3(2015):408-417.
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