Comparative Genomics Analysis of Streptomyces Species Reveals Their Adaptation to the Marine Environment and Their Diversity at the Genomic Level
Tian, Xinpeng; Zhang, Zhewen; Yang, Tingting; Chen, Meili; Li, Jie; Chen, Fei; Yang, Jin; Li, Wenjie; Zhang, Bing; Zhang, Zhang; Wu, Jiayan; Zhang, Changsheng; Long, Lijuan; Xiao, Jingfa; Long, LJ (reprint author), Chinese Acad Sci, South China Sea Inst Oceanol, Key Lab Trop Marine Bioresources & Ecol, Guangzhou, Guangdong, Peoples R China.; Long, LJ (reprint author), Chinese Acad Sci, South China Sea Inst Oceanol, Guangdong Key Lab Marine Materia Med, Guangzhou, Guangdong, Peoples R China.; Xiao, JF (reprint author), Chinese Acad Sci, Beijing Inst Genom, Key Lab Genome Sci & Informat, Beijing, Peoples R China.
2016
发表期刊FRONTIERS IN MICROBIOLOGY
卷号7页码:998
摘要Over 200 genomes of streptomycete strains that were isolated from various environments are available from the NCBI. However, little is known about the characteristics that are linked to marine adaptation in marine-derived streptomycetes. The particularity and complexity of the marine environment suggest that marine streptomycetes are genetically diverse. Here, we sequenced nine strains from the Streptomyces genus that were isolated from different longitudes, latitudes, and depths of the South China Sea. Then we compared these strains to 22 NCBI downloaded streptomycete strains. Thirty-one streptomycete strains are clearly grouped into a marine-derived subgroup and multiple source subgroup-based phylogenetic tree. The phylogenetic analyses have revealed the dynamic process underlying streptomycete genome evolution, and lateral gene transfer is an important driving force during the process. Pan-genomics analyses have revealed that streptomycetes have an open pan-genome, which reflects the diversity of these streptomycetes and guarantees the species a quick and economical response to diverse environments. Functional and comparative genomics analyses indicate that the marine-derived streptomycetes subgroup possesses some common characteristics of marine adaptation. Our findings have expanded our knowledge of how ocean isolates of streptomycete strains adapt to marine environments. The availability of streptomycete genomes from the South China Sea will be beneficial for further analysis on marine streptomycetes and will enrich the South China Sea's genetic data sources.
部门归属[Tian, Xinpeng; Li, Jie; Zhang, Changsheng; Long, Lijuan] Chinese Acad Sci, South China Sea Inst Oceanol, Key Lab Trop Marine Bioresources & Ecol, Guangzhou, Guangdong, Peoples R China; [Tian, Xinpeng; Li, Jie; Zhang, Changsheng; Long, Lijuan] Chinese Acad Sci, South China Sea Inst Oceanol, Guangdong Key Lab Marine Materia Med, Guangzhou, Guangdong, Peoples R China; [Zhang, Zhewen; Yang, Tingting; Chen, Meili; Chen, Fei; Zhang, Zhang; Wu, Jiayan; Xiao, Jingfa] Chinese Acad Sci, Beijing Inst Genom, Key Lab Genome Sci & Informat, Beijing, Peoples R China; [Yang, Tingting] Univ Chinese Acad Sci, Beijing, Peoples R China; [Yang, Jin; Li, Wenjie; Zhang, Bing] Chinese Acad Sci, Beijing Inst Genom, Core Genom Facil, Beijing, Peoples R China ; LMB
关键词Comparative Genomics Streptomycete Pan-genomics Genome Dynamics Marine Environment Adaptation
学科领域Microbiology
文献类型期刊论文
条目标识符http://ir.scsio.ac.cn/handle/344004/15393
专题中科院海洋生物资源可持续利用重点实验室
通讯作者Long, LJ (reprint author), Chinese Acad Sci, South China Sea Inst Oceanol, Key Lab Trop Marine Bioresources & Ecol, Guangzhou, Guangdong, Peoples R China.; Long, LJ (reprint author), Chinese Acad Sci, South China Sea Inst Oceanol, Guangdong Key Lab Marine Materia Med, Guangzhou, Guangdong, Peoples R China.; Xiao, JF (reprint author), Chinese Acad Sci, Beijing Inst Genom, Key Lab Genome Sci & Informat, Beijing, Peoples R China.
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Tian, Xinpeng,Zhang, Zhewen,Yang, Tingting,et al. Comparative Genomics Analysis of Streptomyces Species Reveals Their Adaptation to the Marine Environment and Their Diversity at the Genomic Level[J]. FRONTIERS IN MICROBIOLOGY,2016,7:998.
APA Tian, Xinpeng.,Zhang, Zhewen.,Yang, Tingting.,Chen, Meili.,Li, Jie.,...&Xiao, JF .(2016).Comparative Genomics Analysis of Streptomyces Species Reveals Their Adaptation to the Marine Environment and Their Diversity at the Genomic Level.FRONTIERS IN MICROBIOLOGY,7,998.
MLA Tian, Xinpeng,et al."Comparative Genomics Analysis of Streptomyces Species Reveals Their Adaptation to the Marine Environment and Their Diversity at the Genomic Level".FRONTIERS IN MICROBIOLOGY 7(2016):998.
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