SCSIO OpenIR  > 中科院海洋生物资源可持续利用重点实验室
Comparative Genomics Analysis of Streptomyces Species Reveals Their Adaptation to the Marine Environment and Their Diversity at the Genomic Level
Tian, Xinpeng; Zhang, Zhewen; Yang, Tingting; Chen, Meili; Li, Jie; Chen, Fei; Yang, Jin; Li, Wenjie; Zhang, Bing; Zhang, Zhang; Wu, Jiayan; Zhang, Changsheng; Long, Lijuan; Xiao, Jingfa; Long, LJ (reprint author), Chinese Acad Sci, South China Sea Inst Oceanol, Key Lab Trop Marine Bioresources & Ecol, Guangzhou, Guangdong, Peoples R China.; Long, LJ (reprint author), Chinese Acad Sci, South China Sea Inst Oceanol, Guangdong Key Lab Marine Materia Med, Guangzhou, Guangdong, Peoples R China.; Xiao, JF (reprint author), Chinese Acad Sci, Beijing Inst Genom, Key Lab Genome Sci & Informat, Beijing, Peoples R China.
2016
Source PublicationFRONTIERS IN MICROBIOLOGY
Volume7Pages:998
AbstractOver 200 genomes of streptomycete strains that were isolated from various environments are available from the NCBI. However, little is known about the characteristics that are linked to marine adaptation in marine-derived streptomycetes. The particularity and complexity of the marine environment suggest that marine streptomycetes are genetically diverse. Here, we sequenced nine strains from the Streptomyces genus that were isolated from different longitudes, latitudes, and depths of the South China Sea. Then we compared these strains to 22 NCBI downloaded streptomycete strains. Thirty-one streptomycete strains are clearly grouped into a marine-derived subgroup and multiple source subgroup-based phylogenetic tree. The phylogenetic analyses have revealed the dynamic process underlying streptomycete genome evolution, and lateral gene transfer is an important driving force during the process. Pan-genomics analyses have revealed that streptomycetes have an open pan-genome, which reflects the diversity of these streptomycetes and guarantees the species a quick and economical response to diverse environments. Functional and comparative genomics analyses indicate that the marine-derived streptomycetes subgroup possesses some common characteristics of marine adaptation. Our findings have expanded our knowledge of how ocean isolates of streptomycete strains adapt to marine environments. The availability of streptomycete genomes from the South China Sea will be beneficial for further analysis on marine streptomycetes and will enrich the South China Sea's genetic data sources.
Department[Tian, Xinpeng; Li, Jie; Zhang, Changsheng; Long, Lijuan] Chinese Acad Sci, South China Sea Inst Oceanol, Key Lab Trop Marine Bioresources & Ecol, Guangzhou, Guangdong, Peoples R China; [Tian, Xinpeng; Li, Jie; Zhang, Changsheng; Long, Lijuan] Chinese Acad Sci, South China Sea Inst Oceanol, Guangdong Key Lab Marine Materia Med, Guangzhou, Guangdong, Peoples R China; [Zhang, Zhewen; Yang, Tingting; Chen, Meili; Chen, Fei; Zhang, Zhang; Wu, Jiayan; Xiao, Jingfa] Chinese Acad Sci, Beijing Inst Genom, Key Lab Genome Sci & Informat, Beijing, Peoples R China; [Yang, Tingting] Univ Chinese Acad Sci, Beijing, Peoples R China; [Yang, Jin; Li, Wenjie; Zhang, Bing] Chinese Acad Sci, Beijing Inst Genom, Core Genom Facil, Beijing, Peoples R China ; LMB
KeywordComparative Genomics Streptomycete Pan-genomics Genome Dynamics Marine Environment Adaptation
Subject AreaMicrobiology
Document Type期刊论文
Identifierhttp://ir.scsio.ac.cn/handle/344004/15393
Collection中科院海洋生物资源可持续利用重点实验室
Corresponding AuthorLong, LJ (reprint author), Chinese Acad Sci, South China Sea Inst Oceanol, Key Lab Trop Marine Bioresources & Ecol, Guangzhou, Guangdong, Peoples R China.; Long, LJ (reprint author), Chinese Acad Sci, South China Sea Inst Oceanol, Guangdong Key Lab Marine Materia Med, Guangzhou, Guangdong, Peoples R China.; Xiao, JF (reprint author), Chinese Acad Sci, Beijing Inst Genom, Key Lab Genome Sci & Informat, Beijing, Peoples R China.
Recommended Citation
GB/T 7714
Tian, Xinpeng,Zhang, Zhewen,Yang, Tingting,et al. Comparative Genomics Analysis of Streptomyces Species Reveals Their Adaptation to the Marine Environment and Their Diversity at the Genomic Level[J]. FRONTIERS IN MICROBIOLOGY,2016,7:998.
APA Tian, Xinpeng.,Zhang, Zhewen.,Yang, Tingting.,Chen, Meili.,Li, Jie.,...&Xiao, JF .(2016).Comparative Genomics Analysis of Streptomyces Species Reveals Their Adaptation to the Marine Environment and Their Diversity at the Genomic Level.FRONTIERS IN MICROBIOLOGY,7,998.
MLA Tian, Xinpeng,et al."Comparative Genomics Analysis of Streptomyces Species Reveals Their Adaptation to the Marine Environment and Their Diversity at the Genomic Level".FRONTIERS IN MICROBIOLOGY 7(2016):998.
Files in This Item:
File Name/Size DocType Version Access License
Comparative Genomics(2502KB)期刊论文作者接受稿开放获取CC BY-NC-SAApplication Full Text
Related Services
Recommend this item
Bookmark
Usage statistics
Export to Endnote
Terms of Use
No data!
Social Bookmark/Share
All comments (0)
No comment.
 

Items in the repository are protected by copyright, with all rights reserved, unless otherwise indicated.