Metabolomics: an emerging frontier of systems biology in marine macrophytes
Kumar, Manoj; Kuzhiumparambil, Unnikrishnan; Pernice, Mathieu; Jiang, Zhijian; Ralph, Peter J.; Kumar, M (reprint author), UTS, Fac Sci, Plant Funct Biol & Climate Change Cluster C3, Sydney, NSW 2007, Australia.
2016
发表期刊ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS
卷号16页码:76-92
摘要Metabolomics is a rapidly emerging discipline within functional genomics which is increasingly being applied to understand biochemical phenotypes across a range of biological systems. Metabolomics measures all (or a subset) metabolites in a cell at a specific time point, reflecting a snapshot of all the regulatory events responding to the external environmental conditions. Although metabolomics and systems biology approaches have been applied to the study of terrestrial plants, few marine macrophytes have been examined using these novel technologies. Marine macrophytes (including seaweeds and seagrasses) are marine ecosystem engineers delivering a range of ecologically and economically valuable biological services; however they are under threat from a wide range of anthropogenic stressors, climate variation, invasive species and pathogens. Investigating metabolomic regulation in these organisms is crucial to understand their acclimation, adaptation and defence responses to environmental challenges. This review describes the current analytical tools available to study metabolomics in marine macrophytes, along with their limitations for both targeted and non-targeted workflows. To illustrate recent advances in systems biology studies in marine macrophytes, we describe how metabolites are used in chemical defence to deter a broad range of invasive species and pathogens, as well as metabolomic reprogramming leading to acclimation or adaptive strategies to environmental and anthropogenic stresses. Where possible, the mechanistic processes associated with primary and secondary plant metabolism governing cellular homeostasis under extreme environments are discussed. Further, we provide a comprehensive overview of an in silico plant metabolome database that can be utilized to advance our knowledge from a system biology approach to marine macrophytes. Finally, functional integration of metabolomics with the allied "omics" disciplines of transcriptomics and proteomics, as well as the emerging discipline of "fluxomics" are discussed in the context of developing biological system networks, the identification of unknown gene/protein functions and the analysis of metabolic pathways in marine plants exposed to stress. Crown Copyright (C) 2016 Published by Elsevier B.V. All rights reserved.
部门归属[Kumar, Manoj; Kuzhiumparambil, Unnikrishnan; Pernice, Mathieu; Jiang, Zhijian; Ralph, Peter J.] UTS, Fac Sci, Plant Funct Biol & Climate Change Cluster C3, Sydney, NSW 2007, Australia; [Jiang, Zhijian] Chinese Acad Sci, South China Sea Inst Oceanol, Key Lab Trop Marine Bioresources & Ecol, Guangzhou 510301, Guangdong, Peoples R China ; LMB
关键词Metabolomics Seaweeds Seagrass Chemical Defence Omics Abiotic Stress System Biology
学科领域Biotechnology & Applied Microbiology
文献类型期刊论文
条目标识符http://ir.scsio.ac.cn/handle/344004/15414
专题中科院海洋生物资源可持续利用重点实验室
通讯作者Kumar, M (reprint author), UTS, Fac Sci, Plant Funct Biol & Climate Change Cluster C3, Sydney, NSW 2007, Australia.
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GB/T 7714
Kumar, Manoj,Kuzhiumparambil, Unnikrishnan,Pernice, Mathieu,et al. Metabolomics: an emerging frontier of systems biology in marine macrophytes[J]. ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS,2016,16:76-92.
APA Kumar, Manoj,Kuzhiumparambil, Unnikrishnan,Pernice, Mathieu,Jiang, Zhijian,Ralph, Peter J.,&Kumar, M .(2016).Metabolomics: an emerging frontier of systems biology in marine macrophytes.ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS,16,76-92.
MLA Kumar, Manoj,et al."Metabolomics: an emerging frontier of systems biology in marine macrophytes".ALGAL RESEARCH-BIOMASS BIOFUELS AND BIOPRODUCTS 16(2016):76-92.
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