Transcriptomic analyses on muscle tissues of Litopenaeus vannamei provide the first profile insight into the response to low temperature stress
Huang, W; Ren, CH; Li, HM; Huo, D; Wang, YH; Jiang, X; Tian, YS; Luo, P; Chen, T; Hu, CQ; chan1010@scsio.ac.cn; hucq@scsio.ac.cn
2017
发表期刊PLOS ONE
卷号12期号:6页码:e0178604-
摘要The Pacific white shrimp (Litopenaeus vannamei) is an important cultured crustacean species worldwide. However, little is known about the molecular mechanism of this species involved in the response to cold stress. In this study, four separate RNA-Seq libraries of L. vannamei were generated from 13 degrees C stress and control temperature. Total 29,662 of Unigenes and overall of 19,619 annotated genes were obtained. Three comparisons were carried out among the four libraries, in which 72 of the top 20% of differentially-expressed genes were obtained, 15 GO and 5 KEGG temperature-sensitive pathways were fished out. Catalytic activity (GO: 0003824) and Metabolic pathways (ko01100) were the most annotated GO and KEGG pathways in response to cold stress, respectively. In addition, Calcium, MAPK cascade, Transcription factor and Serine/threonine-protein kinase signal pathway were picked out and clustered. Serine/threonine-protein kinase signal pathway might play more important roles in cold adaptation, while other three signal pathway were not widely transcribed. Our results had summarized the differentially-expressed genes and suggested the major important signaling pathways and related genes. These findings provide the first profile insight into the molecular basis of L. vannamei response to cold stress.
部门归属[Huang, Wen; Ren, Chunhua; Li, Hongmei; Huo, Da; Wang, Yanhong; Jiang, Xiao; Tian, Yushun; Luo, Peng; Chen, Ting; Hu, Chaoqun] Chinese Acad Sci, CAS Key Lab Trop Marine Bioresources & Ecol LMB, South China Sea Inst Oceanol, Guangzhou, Guangdong, Peoples R China; [Huang, Wen; Ren, Chunhua; Wang, Yanhong; Jiang, Xiao; Luo, Peng; Chen, Ting; Hu, Chaoqun] Chinese Acad Sci, Key Lab Appl Marine Biol Guangdong Prov, Guangzhou, Guangdong, Peoples R China; [Huang, Wen; Ren, Chunhua; Wang, Yanhong; Jiang, Xiao; Luo, Peng; Chen, Ting; Hu, Chaoqun] Chinese Acad Sci, Chinese Acad Sci LAMB, South China Sea Inst Oceanol, Guangzhou, Guangdong, Peoples R China; [Huang, Wen; Ren, Chunhua; Chen, Ting; Hu, Chaoqun] South China Sea Bio Resource Exploitat & Utilizat, Guangzhou, Guangdong, Peoples R China; [Li, Hongmei; Huo, Da; Tian, Yushun] Univ Chinese Acad Sci, Beijing, Peoples R China
资助项目LMB
文献类型期刊论文
条目标识符http://ir.scsio.ac.cn/handle/344004/16297
专题中科院海洋生物资源可持续利用重点实验室
通讯作者chan1010@scsio.ac.cn; hucq@scsio.ac.cn
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Huang, W,Ren, CH,Li, HM,et al. Transcriptomic analyses on muscle tissues of Litopenaeus vannamei provide the first profile insight into the response to low temperature stress[J]. PLOS ONE,2017,12(6):e0178604-.
APA Huang, W.,Ren, CH.,Li, HM.,Huo, D.,Wang, YH.,...&hucq@scsio.ac.cn.(2017).Transcriptomic analyses on muscle tissues of Litopenaeus vannamei provide the first profile insight into the response to low temperature stress.PLOS ONE,12(6),e0178604-.
MLA Huang, W,et al."Transcriptomic analyses on muscle tissues of Litopenaeus vannamei provide the first profile insight into the response to low temperature stress".PLOS ONE 12.6(2017):e0178604-.
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