Strand-specific RNA-Seq analysis provides first insight into transcriptome response of & IT;Vibrio alginolyticus & IT; to phage infection
Luo, P; Liu, QT; Deng, YQ; Tian, YS; Yun, L; Hu, CQ; huchaoqun62@163.com
2018
发表期刊MARINE GENOMICS
卷号38页码:5-8
摘要RNA-Seq transcriptome analysis of bacteria during phage infection has been occasionally reported in last several years but little is known about how Vibrio bacteria respond to phage invasion on global transcriptome level. In the present study, transcriptome profiling of V. alginolyticus during a lytic phage infection was first investigated through strand-specific RNA-Seq analysis. The results revealed that 346 unigenes were up-regulated and 860 unigenes were down-regulated during the infection of phage Vp670. Notably, the unigenes involving in phosphorelay signal transduction system were largely down-regulated in infected V. alginolyticus cells. However, some unigenes in the GO terms (DNA binding and sequence-specific DNA binding transcription factor activity) were up-regulated including a csp gene coding cold shock protein. These transcriptome data contribute to a more comprehensive insight into cellular response of V. alginolyticus to phage infection and help us deeply understand the phage-host interplay on molecular levels. (C) 2017 Elsevier B.V. All rights reserved.
部门归属[Luo, Peng; Liu, Qiuting; Deng, Yiqin; Tian, Yushun; Yun, Long; Hu, Chaoqun] Chinese Acad Sci, South China Sea Inst Oceanol, Guangdong Prov Key Lab Appl Marine Biol, CAS Key Lab Trop Marine Bioresources & Ecol, Guangzhou 510301, Guangdong, Peoples R China; [Luo, Peng; Hu, Chaoqun] South China Sea Bioresource Exploitat & Utilizat, Guangzhou 510301, Guangdong, Peoples R China; [Liu, Qiuting; Deng, Yiqin; Tian, Yushun; Yun, Long] Univ Chinese Acad Sci, Beijing 100049, Peoples R China
学科领域Genetics & Heredity ; Marine & Freshwater Biology
关键词[WOS]Transcriptome ; Vibrio alginolyticus ; Phage infection ; Differential expression genes
资助项目LMB
文献类型期刊论文
条目标识符http://ir.scsio.ac.cn/handle/344004/16973
专题中科院海洋生物资源可持续利用重点实验室
通讯作者huchaoqun62@163.com
推荐引用方式
GB/T 7714
Luo, P,Liu, QT,Deng, YQ,et al. Strand-specific RNA-Seq analysis provides first insight into transcriptome response of & IT;Vibrio alginolyticus & IT; to phage infection[J]. MARINE GENOMICS,2018,38:5-8.
APA Luo, P.,Liu, QT.,Deng, YQ.,Tian, YS.,Yun, L.,...&huchaoqun62@163.com.(2018).Strand-specific RNA-Seq analysis provides first insight into transcriptome response of & IT;Vibrio alginolyticus & IT; to phage infection.MARINE GENOMICS,38,5-8.
MLA Luo, P,et al."Strand-specific RNA-Seq analysis provides first insight into transcriptome response of & IT;Vibrio alginolyticus & IT; to phage infection".MARINE GENOMICS 38(2018):5-8.
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