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Identification of Molecular Markers That Are Specific to the Class Thermoleophilia
Hu, Danyu1; Zang, Yang1; Mao, Yingjin1; Gao, Beile
2019
Source PublicationFRONTIERS IN MICROBIOLOGY
ISSN1664-302X
Volume10Pages:1185
AbstractThe class Thermoleophilia is one of the deep-rooting lineages within the Actinobacteria phylum and metagenomic investigation of microbial diversity suggested that species associated with the class Thermoleophilia are abundant in hot spring and soil samples. However, very few species of this class have been cultivated and characterized. Our understanding of the phylogeny and taxonomy of Thermoleophilia is solely based on 16S rRNA sequence analysis of limited cultivable representatives, but no other phenotypic or genotypic characteristics are known that can clearly discriminate members of this class from the other taxonomic units within the kingdom bacteria. This study reports phylogenomic analysis for 12 sequenced members of this class and clearly resolves the interrelationship of not yet cultivated species with reconstructed genomes and known type species. Comparative genome analysis discovered 12 CSIs in different proteins and 32 CSPs that are specific to all species of this class. In addition, a large number of CSIs or CSPs were identified to be unique to certain lineages within this class. This study represents the first and most comprehensive phylogenetic analysis of the class Thermoleophilia, and the identified CSIs and CSPs provide valuable molecular markers for the identification and delineation of species belonging to this class or its subordinate taxa.
DepartmentLMB
KeywordThermoleophilia phylogeny molecular signatures conserved signature indels conserved signature proteins
DOI10.3389/fmicb.2019.01185
Citation statistics
Cited Times:2[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.scsio.ac.cn/handle/344004/17840
Collection中科院海洋生物资源可持续利用重点实验室
Affiliation1.Chinese Acad Sci, South China Sea Inst Oceanol, Guangdong Key Lab Marine Mat Med, CAS Key Lab Trop Marine Bio Resources & Ecol, Guangzhou, Guangdong, Peoples R China
2.Univ Chinese Acad Sci, Beijing, Peoples R China
Recommended Citation
GB/T 7714
Hu, Danyu,Zang, Yang,Mao, Yingjin,et al. Identification of Molecular Markers That Are Specific to the Class Thermoleophilia[J]. FRONTIERS IN MICROBIOLOGY,2019,10:1185.
APA Hu, Danyu,Zang, Yang,Mao, Yingjin,&Gao, Beile.(2019).Identification of Molecular Markers That Are Specific to the Class Thermoleophilia.FRONTIERS IN MICROBIOLOGY,10,1185.
MLA Hu, Danyu,et al."Identification of Molecular Markers That Are Specific to the Class Thermoleophilia".FRONTIERS IN MICROBIOLOGY 10(2019):1185.
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