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Bacterial community structure of mangrove sediments in relation to environmental variables accessed by 16S rRNA gene-denaturing gradient gel electrophoresis fingerprinting
Zhang, YY; Dong, JD; Yang, B; Ling, J; Wang, YS; Zhang, S; amy0517@gmail.com
2009
Source PublicationSCIENTIA MARINA
ISSN0214-8358
Volume73Issue:3Pages:487-498
AbstractBacterial community structure and the relationship between environmental variables and microbial communities in the surface sediments of tropical mangrove ecosystems were investigated in Sanya, Hainan Island, China. Profiles of bacterial communities were generated using culture-independent PCR-denaturing gradient get electrophoresis (DGGE), and the results were interpreted with multivariate statistical analysis. Findings suggested that microbial communities varied with sample collection sites and seasons. The samples collected from the same sample sites tit the same time had more similar microbial communities except samples SH3 and AB5, which also had unique sediment quality. Canonical correspondence analysis (CCA) revealed that the organic carbon concentration of the sediments accounted for a significant amount of the variability in the bacterial community composition. Phylogenetic analysis was used to identify the major groups of the predominant bacterial phylotypes. 16S rRNA gene-V3 fragments from 17 individual DGGE bands were sequenced and the corresponding bacteria were found in mangrove sediments for the first time based on BLAST results. Predominant bacterial phylotypes Clustered with various taxonomic groups, including Proteobacteria, Bacteroidetes, Gemmatimonadetes, Actinobacteria and Firmicutes.
Department[Zhang, Yanying; Dong, Junde; Yang, Bin; Ling, Juan; Wang, Youshao; Zhang, Si] Chinese Acad Sci, S China Sea Inst Oceanol, Guangzhou 510301, Guangdong, Peoples R China; [Zhang, Yanying; Dong, Junde; Yang, Bin; Ling, Juan] Natl Expt Stn Trop Marine Biol, Sanya, Hainan Island, Peoples R China; [Zhang, Yanying; Dong, Junde; Yang, Bin; Ling, Juan; Zhang, Si] LMB, Key Lab Marine Bioresources Sustainable Utilisat, Guangzhou, Guangdong, Peoples R China; [Zhang, Yanying; Yang, Bin; Ling, Juan] Chinese Acad Sci, Grad Sch, Beijing, Peoples R China
KeywordBacterial Community Mangrove Sediments Denaturing Gradient Gel Electrophoresis Multivariate Statistics
Subject AreaMarine & Freshwater Biology
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Indexed Bysci
Funding ProjectLMB
WOS IDWOS:000269965600007
Citation statistics
Cited Times:18[WOS]   [WOS Record]     [Related Records in WOS]
Document Type期刊论文
Identifierhttp://ir.scsio.ac.cn/handle/344004/5068
Collection中科院海洋生物资源可持续利用重点实验室
Corresponding Authoramy0517@gmail.com
Recommended Citation
GB/T 7714
Zhang, YY,Dong, JD,Yang, B,et al. Bacterial community structure of mangrove sediments in relation to environmental variables accessed by 16S rRNA gene-denaturing gradient gel electrophoresis fingerprinting[J]. SCIENTIA MARINA,2009,73(3):487-498.
APA Zhang, YY.,Dong, JD.,Yang, B.,Ling, J.,Wang, YS.,...&amy0517@gmail.com.(2009).Bacterial community structure of mangrove sediments in relation to environmental variables accessed by 16S rRNA gene-denaturing gradient gel electrophoresis fingerprinting.SCIENTIA MARINA,73(3),487-498.
MLA Zhang, YY,et al."Bacterial community structure of mangrove sediments in relation to environmental variables accessed by 16S rRNA gene-denaturing gradient gel electrophoresis fingerprinting".SCIENTIA MARINA 73.3(2009):487-498.
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